Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Daci_1805PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: aav:Aave_3867 transport-associated. (106 aa)    
Predicted Functional Partners:
Daci_1807
PFAM: protein of unknown function DUF1328; KEGG: ajs:Ajs_3511 protein of unknown function DUF1328.
  
  
 0.897
Daci_0369
PFAM: CsbD family protein; KEGG: aav:Aave_0312 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
 
  
 0.891
Daci_1806
KEGG: aav:Aave_3865 hypothetical protein.
  
    0.768
Daci_4709
KEGG: ypi:YpsIP31758_3075 putative lipoprotein.
   
  
 0.681
Daci_4044
PFAM: flavodoxin/nitric oxide synthase; KEGG: vei:Veis_4981 flavodoxin/nitric oxide synthase.
  
  
 0.569
Daci_3893
PFAM: OsmC family protein; KEGG: aav:Aave_0009 OsmC family protein.
   
  
 0.564
Daci_1804
KEGG: aav:Aave_3868 hypothetical protein.
       0.558
Daci_5870
PFAM: glycosyl transferase family 20; KEGG: pna:Pnap_0524 alpha,alpha-trehalose-phosphate synthase (UDP-forming).
   
  
 0.534
Daci_3473
PFAM: CsbD family protein; KEGG: pna:Pnap_3279 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
  
    0.473
Daci_3991
PFAM: protein of unknown function DUF883 ElaB; KEGG: ajs:Ajs_2135 protein of unknown function DUF883, ElaB.
  
  
 0.467
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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