Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_1806KEGG: aav:Aave_3865 hypothetical protein. (129 aa)    
Predicted Functional Partners:
Daci_1807
PFAM: protein of unknown function DUF1328; KEGG: ajs:Ajs_3511 protein of unknown function DUF1328.
  
  
 0.930
Daci_1297
PFAM: Peptidoglycan-binding LysM; transport-associated; KEGG: ajs:Ajs_0533 peptidoglycan-binding LysM.
  
    0.819
Daci_1805
PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: aav:Aave_3867 transport-associated.
  
    0.768
Daci_2123
KEGG: bbr:BB2045 putative lipoprotein.
  
    0.586
Daci_1808
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; CHASE3 domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: aav:Aave_3863 multi-sensor signal transduction histidine kinase.
       0.459
Daci_0370
KEGG: ajs:Ajs_0255 hypothetical protein.
  
    0.452
Daci_1064
PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: vei:Veis_0628 transport-associated.
  
    0.452
Daci_4039
PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: pol:Bpro_0874 transport-associated.
  
    0.452
Daci_0888
PFAM: Rubrerythrin; Ferritin Dps family protein; KEGG: aav:Aave_3866 ferritin, Dps family protein.
  
  
 0.441
Daci_1195
PFAM: OsmC family protein; KEGG: aav:Aave_4272 OsmC family protein.
  
  
 0.421
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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