STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1807PFAM: protein of unknown function DUF1328; KEGG: ajs:Ajs_3511 protein of unknown function DUF1328. (125 aa)    
Predicted Functional Partners:
Daci_0369
PFAM: CsbD family protein; KEGG: aav:Aave_0312 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
 
  
 0.945
Daci_1806
KEGG: aav:Aave_3865 hypothetical protein.
  
  
 0.901
Daci_1805
PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: aav:Aave_3867 transport-associated.
  
  
 0.829
Daci_1297
PFAM: Peptidoglycan-binding LysM; transport-associated; KEGG: ajs:Ajs_0533 peptidoglycan-binding LysM.
  
  
 0.823
Daci_0370
KEGG: ajs:Ajs_0255 hypothetical protein.
 
  
 0.775
Daci_0888
PFAM: Rubrerythrin; Ferritin Dps family protein; KEGG: aav:Aave_3866 ferritin, Dps family protein.
 
    0.740
Daci_3473
PFAM: CsbD family protein; KEGG: pna:Pnap_3279 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
  
  
 0.719
Daci_2490
KEGG: ajs:Ajs_1609 hypothetical protein.
  
    0.672
Daci_5865
PFAM: conserved hypothetical protein; KEGG: aav:Aave_1446 hypothetical protein.
 
    0.662
Daci_4339
TIGRFAM: DNA ligase D; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, polymerase domain protein; DNA polymerase LigD, ligase domain protein; PFAM: DNA primase small subunit; ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: ajs:Ajs_2523 DNA ligase (ATP).
 
   
 0.657
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.