Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_1840KEGG: ajs:Ajs_3490 putative lipoprotein. (165 aa)    
Predicted Functional Partners:
Daci_3809
PFAM: porin Gram-negative type; KEGG: reh:H16_A0625 outer membrane protein (porin).
  
   
 0.707
Daci_0684
KEGG: aav:Aave_0423 PilT protein domain protein.
  
     0.693
Daci_4539
PFAM: porin Gram-negative type; KEGG: pol:Bpro_3117 porin, gram-negative type.
  
   
 0.688
Daci_2519
KEGG: aav:Aave_3010 hypothetical protein.
  
     0.685
Daci_2987
PFAM: Thioredoxin domain; KEGG: aav:Aave_3386 hypothetical protein.
  
    0.682
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
 
 0.678
Daci_0719
PFAM: sodium/hydrogen exchanger; KEGG: aav:Aave_0435 sodium/hydrogen exchanger.
  
     0.663
Daci_5681
KEGG: aav:Aave_0933 porin, gram-negative type.
  
   
 0.644
Daci_1839
KEGG: ajs:Ajs_3491 hypothetical protein.
 
     0.642
Daci_0832
KEGG: ajs:Ajs_4052 putative lipoprotein transmembrane.
  
     0.630
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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