STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1855Gluconate 2-dehydrogenase (acceptor); KEGG: aav:Aave_3925 cytochrome c, class I. (996 aa)    
Predicted Functional Partners:
Daci_1854
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: aav:Aave_3926 (2Fe-2S)-binding domain protein.
  
 
 0.978
Daci_1853
PFAM: monooxygenase FAD-binding; KEGG: aav:Aave_3927 salicylate 1-monooxygenase.
 
  
 0.960
Daci_1848
PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: aav:Aave_3932 isoquinoline 1-oxidoreductase.
 
 
0.946
Daci_3930
PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: spe:Spro_2491 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding.
 
 
0.935
Daci_3931
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: spe:Spro_2492 (2Fe-2S)-binding domain protein.
  
 
 0.910
pncB
Nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP; Belongs to the NAPRTase family.
    
  0.900
Daci_5605
KEGG: ajs:Ajs_0702 hypothetical protein.
     
  0.900
pncB-2
Nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP; Belongs to the NAPRTase family.
    
  0.900
Daci_5503
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
 
 0.800
Daci_5502
Cytochrome b/b6 domain; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.766
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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