Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_1859PFAM: regulatory protein MarR; KEGG: aav:Aave_3922 transcriptional regulator, MarR family. (154 aa)    
Predicted Functional Partners:
Daci_1353
PFAM: regulatory protein MarR; KEGG: rfr:Rfer_0279 transcriptional regulator, MarR family.
  
     0.731
Daci_1850
KEGG: aav:Aave_3930 hypothetical protein.
 
  
 0.697
Daci_3704
PFAM: regulatory protein MarR; KEGG: pna:Pnap_3143 transcriptional regulator, MarR family.
  
     0.591
Daci_1851
PFAM: alpha/beta hydrolase fold; KEGG: aav:Aave_3929 alpha/beta hydrolase fold.
 
     0.514
Daci_1860
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: mpt:Mpe_A3709 NADH dehydrogenase (quinone).
       0.426
Daci_3032
PFAM: protein of unknown function DUF1028; KEGG: bxe:Bxe_A3464 hypothetical protein.
  
     0.419
Daci_1848
PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: aav:Aave_3932 isoquinoline 1-oxidoreductase.
 
     0.417
Daci_1861
TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mpt:Mpe_A3710 NAD-dependent formate dehydrogenase alpha subunit.
       0.413
Daci_1862
KEGG: bxe:Bxe_A0963 NAD-dependent formate dehydrogenase, delta subunit.
       0.413
Daci_3696
PFAM: regulatory protein MarR; KEGG: pol:Bpro_2197 transcriptional regulator, MarR family.
  
     0.411
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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