Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Daci_1886PFAM: alpha/beta hydrolase fold; KEGG: rme:Rmet_4220 alpha/beta hydrolase fold. (284 aa)    
Predicted Functional Partners:
Daci_1885
PFAM: CoA-binding domain protein; KEGG: vei:Veis_3321 CoA-binding domain protein.
       0.773
Daci_1884
PFAM: conserved hypothetical protein; KEGG: vei:Veis_3320 uncharacterized protein UPF0065.
       0.768
Daci_1887
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vei:Veis_3317 transcriptional regulator, LysR family.
       0.762
Daci_1883
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rme:Rmet_5425 acyl-CoA dehydrogenase-like protein.
  
  0.727
Daci_5984
PFAM: alpha/beta hydrolase fold; Ndr family protein; KEGG: rfr:Rfer_2846 alpha/beta hydrolase.
  
   
 0.599
Daci_0950
PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_3690 alpha/beta hydrolase fold.
  
   
 0.538
Daci_1882
PFAM: MmgE/PrpD family protein; KEGG: vei:Veis_3318 MmgE/PrpD family protein.
 
     0.520
Daci_3812
PFAM: alpha/beta hydrolase fold; KEGG: vei:Veis_1360 alpha/beta hydrolase fold.
  
   
 0.457
apaH
Bis(5'nucleosyl)-tetraphosphatase, ApaH; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
  0.427
Daci_4366
KEGG: aav:Aave_3065 hypothetical protein.
      
 0.425
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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