Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Daci_1891PFAM: protein of unknown function DUF6 transmembrane; KEGG: nmu:Nmul_A2052 protein of unknown function DUF6. (287 aa)    
Predicted Functional Partners:
Daci_1890
PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: ppf:Pput_2733 putative transcriptional regulator, GntR family.
 
     0.894
Daci_3668
PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bbr:BB4262 putative GntR-family transcriptional regulator.
 
     0.536
Daci_4710
PFAM: Glutathione S-transferase domain; KEGG: pfl:PFL_4586 glutathione S-transferase.
 
     0.494
Daci_0545
KEGG: mlo:mll7009 hypothetical protein.
  
     0.411
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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