STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1915PFAM: Exonuclease, phage-type; KEGG: har:HEAR2308 unknown prophage (lambda); putative exonuclease. (209 aa)    
Predicted Functional Partners:
Daci_1916
PFAM: RecT protein; KEGG: bbr:BB2192 phage-related DNA recombination protein.
  
  
 0.868
Daci_1914
Hypothetical protein.
       0.745
Daci_1917
Hypothetical protein.
       0.520
Daci_3176
KEGG: ajs:Ajs_2343 hypothetical protein.
  
     0.497
Daci_5814
VRR-NUC domain protein; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.
  
     0.484
Daci_1913
PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: pnu:Pnuc_0838 histone family protein nucleoid-structuring protein H-NS.
       0.416
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.