Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1916PFAM: RecT protein; KEGG: bbr:BB2192 phage-related DNA recombination protein. (307 aa)    
Predicted Functional Partners:
Daci_1915
PFAM: Exonuclease, phage-type; KEGG: har:HEAR2308 unknown prophage (lambda); putative exonuclease.
  
  
 0.876
Daci_1914
Hypothetical protein.
       0.737
Daci_3238
KEGG: ecv:APECO1_523 hypothetical protein.
 
   
 0.587
Daci_3229
PFAM: Lambda NinG family protein; KEGG: hit:NTHI1505 hypothetical protein.
 
     0.524
Daci_1917
Hypothetical protein.
       0.520
Daci_2581
PFAM: replication gene A; KEGG: bps:BPSS1052 hypothetical bacteriophage replication protein.
   
 
 0.490
Daci_2615
PFAM: replication gene A; KEGG: bps:BPSS1052 hypothetical bacteriophage replication protein.
   
 
 0.490
Daci_4670
PFAM: glycoside hydrolase family 24; KEGG: aav:Aave_1729 putative endolysin (lysis protein) (lysozyme).
  
   
 0.461
Daci_1913
PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: pnu:Pnuc_0838 histone family protein nucleoid-structuring protein H-NS.
     
 0.442
Daci_5941
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
      
 0.420
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.