STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1927PFAM: protein of unknown function DUF1508; KEGG: pfo:Pfl_1378 duplicated hypothetical protein. (65 aa)    
Predicted Functional Partners:
Daci_1297
PFAM: Peptidoglycan-binding LysM; transport-associated; KEGG: ajs:Ajs_0533 peptidoglycan-binding LysM.
  
   0.866
Daci_0834
PFAM: Peptidoglycan-binding LysM; KEGG: aav:Aave_4687 peptidoglycan-binding LysM.
  
   0.820
Daci_2602
PFAM: GPW/gp25 family protein; KEGG: csa:Csal_1387 gpW/GP25.
   
   0.692
Daci_2636
PFAM: GPW/gp25 family protein; KEGG: csa:Csal_1387 gpW/GP25.
   
   0.692
Daci_2268
PFAM: PsiF repeat protein; KEGG: ppu:PP_4851 phosphate starvation-inducible protein, PsiF precursor.
  
    0.643
Daci_2586
PFAM: late control D family protein; KEGG: pna:Pnap_3315 phage late control D family protein.
   
   0.636
Daci_2620
PFAM: late control D family protein; KEGG: pna:Pnap_3315 phage late control D family protein.
   
   0.636
Daci_2592
PFAM: tail sheath protein; KEGG: pna:Pnap_3308 phage tail sheath protein.
   
 
 0.614
Daci_2626
PFAM: tail sheath protein; KEGG: pna:Pnap_3308 phage tail sheath protein.
   
 
 0.614
Daci_3438
KEGG: rsp:RSP_2757 hypothetical protein.
   
 
 0.614
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.