STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1941KEGG: ret:RHE_CH01092 putative terminase small subunit protein. (157 aa)    
Predicted Functional Partners:
Daci_1942
TIGRFAM: phage terminase, large subunit, PBSX family; KEGG: bhe:BH09390 phage related protein.
 
   
 0.832
Daci_1943
KEGG: smd:Smed_1838 hypothetical protein.
       0.675
Daci_1944
KEGG: bbt:BBta_5790 hypothetical protein.
       0.675
Daci_4099
TIGRFAM: phage terminase, large subunit, PBSX family; PFAM: terminase large subunit; KEGG: par:Psyc_1001 phage terminase, large subunit, PBSX family.
 
   
 0.503
Daci_2540
KEGG: dar:Daro_1107 hypothetical protein.
  
     0.425
Daci_1945
KEGG: smd:Smed_1831 hypothetical protein.
       0.402
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.