Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1944KEGG: bbt:BBta_5790 hypothetical protein. (104 aa)    
Predicted Functional Partners:
Daci_1943
KEGG: smd:Smed_1838 hypothetical protein.
       0.779
Daci_1942
TIGRFAM: phage terminase, large subunit, PBSX family; KEGG: bhe:BH09390 phage related protein.
       0.678
Daci_1941
KEGG: ret:RHE_CH01092 putative terminase small subunit protein.
       0.675
Daci_1945
KEGG: smd:Smed_1831 hypothetical protein.
       0.463
Daci_1946
KEGG: bbt:BBta_5785 putative phage major head protein.
       0.407
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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