STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1946KEGG: bbt:BBta_5785 putative phage major head protein. (306 aa)    
Predicted Functional Partners:
Daci_1945
KEGG: smd:Smed_1831 hypothetical protein.
       0.692
Daci_1942
TIGRFAM: phage terminase, large subunit, PBSX family; KEGG: bhe:BH09390 phage related protein.
 
     0.687
Daci_1947
Hypothetical protein.
       0.642
Daci_1950
KEGG: zmo:ZMO0389 constituent protein.
       0.538
Daci_1948
Hypothetical protein.
       0.496
Daci_1949
Hypothetical protein.
       0.496
Daci_1951
Hypothetical protein; KEGG: cel:H02F09.3 H02F09.3.
       0.496
Daci_1943
KEGG: smd:Smed_1838 hypothetical protein.
       0.456
Daci_3377
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: ajs:Ajs_1969 hypothetical protein.
  
     0.426
Daci_5150
PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: mms:mma_0255 hypothetical protein.
  
     0.409
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.