Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1957Hypothetical protein; KEGG: mul:MUL_3292 PE-PGRS family protein. (266 aa)    
Predicted Functional Partners:
Daci_1956
Hypothetical protein.
       0.773
Daci_1958
Hypothetical protein.
       0.773
Daci_1959
KEGG: bpd:BURPS668_A2339 hypothetical protein.
       0.773
Daci_1955
KEGG: ddi:DDBDRAFT_0188625 hypothetical protein.
       0.553
Daci_1953
Hypothetical protein.
       0.549
Daci_1954
Hypothetical protein.
       0.549
Daci_1960
KEGG: mms:mma_2193 hypothetical protein.
       0.478
Daci_1952
Hypothetical protein.
       0.460
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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