STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1967Hypothetical protein. (42 aa)    
Predicted Functional Partners:
Daci_1968
PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: aav:Aave_1150 histone family protein nucleoid-structuring protein H-NS.
       0.601
Daci_1637
TIGRFAM: phage head-tail adaptor; PFAM: putative head-tail adaptor protein; KEGG: sit:TM1040_1063 hypothetical protein.
  
 
 0.586
Daci_1632
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: bbr:BB1693 portal protein.
   
 
 0.497
Daci_1107
PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_0659 major facilitator superfamily MFS_1.
   
    0.451
Daci_1108
TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_0660 nitrite transporter.
   
    0.451
Daci_1636
KEGG: ppu:PP_1569 hypothetical protein.
  
 
 0.424
Daci_3238
KEGG: ecv:APECO1_523 hypothetical protein.
   
 
 0.409
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
      
 0.408
Daci_1332
Hypothetical protein; KEGG: aav:Aave_1629 carbohydrate-binding family V/XII.
  
 
 0.401
Daci_3256
KEGG: aav:Aave_1783 carbohydrate-binding family V/XII.
  
 
 0.401
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.