Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Daci_1975KEGG: pna:Pnap_3592 hypothetical protein. (268 aa)    
Predicted Functional Partners:
Daci_1979
KEGG: pna:Pnap_3593 hypothetical protein.
 
     0.895
Daci_1976
Hypothetical protein.
       0.794
Daci_1974
KEGG: pna:Pnap_3588 hypothetical protein.
       0.765
Daci_1977
Hypothetical protein.
       0.724
Daci_5935
PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: bam:Bamb_4024 fimbrial biogenesis outer membrane usher protein.
  
 
 0.720
Daci_5938
PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: bam:Bamb_4024 fimbrial biogenesis outer membrane usher protein.
  
 
 0.720
Daci_1978
KEGG: pna:Pnap_3588 hypothetical protein.
       0.701
Daci_2335
KEGG: saz:Sama_0272 hypothetical protein.
  
     0.624
Daci_0535
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: aav:Aave_4499 transcriptional regulator, XRE family.
  
     0.562
Daci_5289
KEGG: pna:Pnap_1085 putative transmembrane protein.
  
     0.558
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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