STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1979KEGG: pna:Pnap_3593 hypothetical protein. (783 aa)    
Predicted Functional Partners:
Daci_1975
KEGG: pna:Pnap_3592 hypothetical protein.
 
     0.895
Daci_2335
KEGG: saz:Sama_0272 hypothetical protein.
  
   
 0.737
Daci_1977
Hypothetical protein.
       0.605
Daci_0539
PFAM: YiaAB two helix domain protein; KEGG: aav:Aave_4490 YiaAB two helix domain protein.
  
     0.599
Daci_1978
KEGG: pna:Pnap_3588 hypothetical protein.
       0.571
Daci_3892
KEGG: aav:Aave_2747 zinc metalloproteinase Mpr protein.
  
     0.561
Daci_1976
Hypothetical protein.
       0.555
Daci_5289
KEGG: pna:Pnap_1085 putative transmembrane protein.
  
     0.519
Daci_1974
KEGG: pna:Pnap_3588 hypothetical protein.
       0.515
Daci_3951
KEGG: aav:Aave_2813 putative ferric uptake regulator, Fur family.
  
     0.492
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.