Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_1986PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: reh:H16_B0869 hypothetical protein. (336 aa)    
Predicted Functional Partners:
Daci_1985
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: reh:H16_B0868 metal-dependent hydrolase.
     
 0.789
Daci_1984
PFAM: Na+/solute symporter; KEGG: reh:H16_B0867 APC transporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.741
Daci_1983
KEGG: reh:H16_B0866 hypothetical protein.
       0.711
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
 
 
 0.625
folE2
Protein of unknown function DUF198; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
  
 0.542
dksA
Transcriptional regulator, TraR/DksA family; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.
  
  
 0.500
Daci_1982
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_B0865 transcriptional regulator, LysR-family.
       0.489
rpmB
PFAM: ribosomal protein L28; KEGG: ajs:Ajs_3384 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.434
rpmG
PFAM: ribosomal protein L33; KEGG: aav:Aave_3429 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
  
  
 0.406
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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