STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1993PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: reu:Reut_B3754 regulatory protein, IclR. (275 aa)    
Predicted Functional Partners:
Daci_1995
Cobaltochelatase; PFAM: Cobalt chelatase CobT subunit; KEGG: reu:Reut_B3756 CobT protein.
 
     0.851
Daci_1994
Cobaltochelatase; KEGG: reu:Reut_B3755 putative MoxR-like ATPase; PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase.
 
    0.826
Daci_5727
PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; KEGG: reh:H16_B1758 allophanate hydrolase.
  
    0.824
Daci_1992
TIGRFAM: sulfoacetaldehyde acetyltransferase; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: vei:Veis_3999 thiamine pyrophosphate enzyme domain protein TPP-binding; Belongs to the TPP enzyme family.
 
     0.774
Daci_4281
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: vei:Veis_3984 regulatory proteins, IclR.
  
     0.760
Daci_1125
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: aav:Aave_0741 transcriptional regulator, IclR family.
  
     0.748
Daci_0267
PFAM: regulatory protein IclR; KEGG: reh:H16_A2948 transcriptional regulator, IclR-family.
  
     0.743
Daci_0796
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: rme:Rmet_5383 transcriptional regulator, IclR family.
  
     0.743
Daci_0689
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: reu:Reut_B5276 regulatory protein, IclR.
  
     0.676
Daci_0581
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bbt:BBta_4674 putative transcriptional regulatory protein.
  
     0.663
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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