STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2010Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rme:Rmet_4629 transcriptional regulator, AraC family. (360 aa)    
Predicted Functional Partners:
Daci_2007
PFAM: protein of unknown function DUF849; KEGG: reu:Reut_B3902 protein of unknown function DUF849, prokaryotic.
 
     0.768
Daci_5444
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: reu:Reut_B3547 helix-turn-helix, AraC type.
  
     0.751
Daci_2009
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: reu:Reut_B3840 zinc-containing alcohol dehydrogenase superfamily.
       0.746
Daci_2006
PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: bam:Bamb_1586 taurine dioxygenase.
 
     0.622
Daci_2008
PFAM: conserved hypothetical protein; KEGG: reu:Reut_C6081 hypothetical protein.
       0.621
Daci_0109
PFAM: Fibronectin type III domain protein; KEGG: ava:Ava_4728 endonuclease/exonuclease/phosphatase.
  
     0.473
Daci_2011
PFAM: protein of unknown function DUF849; KEGG: reh:H16_B1005 hypothetical protein.
  
     0.473
Daci_2005
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: reh:H16_B2519 transcriptional regulator.
 
    
0.436
Daci_1789
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: azo:azo1936 putative AraC-family transcriptional regulator.
 
 
 0.435
Daci_1375
PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: reu:Reut_B3704 protein of unknown function DUF1214:protein of unknown function DUF1254.
  
     0.406
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.