STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2011PFAM: protein of unknown function DUF849; KEGG: reh:H16_B1005 hypothetical protein. (352 aa)    
Predicted Functional Partners:
Daci_2012
PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: reu:Reut_A1602 taurine dioxygenase.
 
     0.737
Daci_4991
KEGG: reh:H16_B0479 hypothetical protein.
  
     0.665
Daci_5967
PFAM: protein of unknown function DUF849; KEGG: vei:Veis_0513 protein of unknown function DUF849.
  
     0.645
Daci_2014
KEGG: vei:Veis_4644 porin, gram-negative type.
 
     0.589
Daci_2013
PFAM: conserved hypothetical protein; KEGG: reu:Reut_B3854 hypothetical protein.
       0.558
Daci_2010
Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rme:Rmet_4629 transcriptional regulator, AraC family.
  
     0.473
kynB
Arylformamidase; Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation.
  
    0.437
Daci_3674
PFAM: Cupin 2 conserved barrel domain protein; KEGG: aav:Aave_0177 cupin 2, conserved barrel domain protein.
  
     0.433
Daci_0929
KEGG: rme:Rmet_4455 hypothetical protein.
  
    0.430
Daci_2005
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: reh:H16_B2519 transcriptional regulator.
  
     0.421
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.