Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_2017PFAM: major facilitator superfamily MFS_1; KEGG: mlo:mlr2785 probable integral membrane efflux protein. (516 aa)    
Predicted Functional Partners:
Daci_0324
PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN3248 transporter, MFS family.
  
   
 0.755
Daci_3366
PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_1703 major facilitator superfamily MFS_1.
  
   
 0.753
Daci_2018
PFAM: globin; KEGG: ajs:Ajs_3454 globin.
       0.642
Daci_3742
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: eba:ebA3448 probable multidrug resistance B (translocase) transmembrane protein.
  
   
 0.604
Daci_2016
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_A3311 transcriptional regulator, LysR family.
  
    0.501
Daci_5149
PFAM: Ankyrin; KEGG: bur:Bcep18194_B0772 hypothetical protein.
 
 0.468
Daci_3365
TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_1867 drug resistance transporter, Bcr/CflA subfamily.
  
   
 0.428
Daci_5152
TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rfr:Rfer_1536 drug resistance transporter Bcr/CflA subfamily.
  
   
 0.421
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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