Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Daci_2041PFAM: multi antimicrobial extrusion protein MatE. (433 aa)    
Predicted Functional Partners:
Daci_0939
TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: ajs:Ajs_3960 glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.546
Daci_2572
TIGRFAM: squalene synthase HpnD; PFAM: Squalene/phytoene synthase; KEGG: ajs:Ajs_1202 squalene/phytoene synthase.
   
  
 0.524
Daci_2573
TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; KEGG: ajs:Ajs_1205 squalene/phytoene synthase.
   
  
 0.524
Daci_4724
Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
    0.519
Daci_0759
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: ajs:Ajs_2361 ABC transporter related.
  
  
 0.446
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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