STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2054PFAM: major facilitator superfamily MFS_1; KEGG: xac:XAC0229 MFS transporter. (403 aa)    
Predicted Functional Partners:
Daci_2056
KEGG: aav:Aave_0171 putative secreted protein.
 
     0.807
Daci_2055
PFAM: protein of unknown function DUF486; KEGG: mes:Meso_1652 protein of unknown function DUF486.
       0.768
Daci_2053
PFAM: DNA/RNA non-specific endonuclease; KEGG: pol:Bpro_5192 DNA/RNA non-specific endonuclease.
       0.485
Daci_3050
KEGG: mms:mma_0439 small permease component of tripartite tricarboxylate transporter.
  
     0.435
Daci_2058
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bvi:Bcep1808_6446 integral membrane sensor signal transduction histidine kinase.
 
     0.422
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.