Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_2065PFAM: TadE family protein; KEGG: bmn:BMA10247_1050 TadE family protein. (171 aa)    
Predicted Functional Partners:
Daci_2071
Flp pilus assembly protein ATPase CpaE-like protein; KEGG: bvi:Bcep1808_1488 response regulator receiver protein.
 
  
 0.960
Daci_2073
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: reh:H16_B0184 flp pilus assembly protein CpaB.
 
  
 0.931
Daci_2067
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bte:BTH_I2537 TPR domain protein.
 
  
 0.928
Daci_2068
PFAM: type II secretion system protein; KEGG: bam:Bamb_1407 type II secretion system protein.
 
  
 0.923
Daci_2069
PFAM: type II secretion system protein; KEGG: reh:H16_B0188 flp pilus assembly protein TadB.
 
  
 0.917
Daci_2063
Membrane protein-like protein; KEGG: bbr:BB1833 hypothetical protein.
 
    0.860
Daci_2072
PFAM: type II and III secretion system protein; KEGG: bvi:Bcep1808_1487 type II and III secretion system protein; Belongs to the bacterial secretin family.
 
  
 0.853
Daci_2070
PFAM: type II secretion system protein E; KEGG: bch:Bcen2424_1523 type II secretion system protein E.
 
  
 0.818
Daci_2064
PFAM: TadE family protein; KEGG: bpa:BPP2374 hypothetical protein.
       0.773
Daci_2062
Sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bxe:Bxe_A2790 sigma54 specific transcriptional regulator, fis family.
 
    0.726
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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