STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2068PFAM: type II secretion system protein; KEGG: bam:Bamb_1407 type II secretion system protein. (334 aa)    
Predicted Functional Partners:
Daci_2071
Flp pilus assembly protein ATPase CpaE-like protein; KEGG: bvi:Bcep1808_1488 response regulator receiver protein.
 
  
 0.986
Daci_2073
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: reh:H16_B0184 flp pilus assembly protein CpaB.
 
  
 0.974
Daci_2070
PFAM: type II secretion system protein E; KEGG: bch:Bcen2424_1523 type II secretion system protein E.
 
  
 0.958
Daci_2067
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bte:BTH_I2537 TPR domain protein.
 
  
 0.954
Daci_2072
PFAM: type II and III secretion system protein; KEGG: bvi:Bcep1808_1487 type II and III secretion system protein; Belongs to the bacterial secretin family.
 
  
 0.949
Daci_2065
PFAM: TadE family protein; KEGG: bmn:BMA10247_1050 TadE family protein.
 
  
 0.925
Daci_2069
PFAM: type II secretion system protein; KEGG: reh:H16_B0188 flp pilus assembly protein TadB.
 
     0.920
Daci_2063
Membrane protein-like protein; KEGG: bbr:BB1833 hypothetical protein.
 
  
 0.899
Daci_2699
TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E; KEGG: ajs:Ajs_2911 type II secretion system protein E.
 
  
 0.833
Daci_0438
TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E; KEGG: rme:Rmet_1550 type II secretion system protein E.
 
  
 0.832
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.