STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2074PFAM: peptidase A24A prepilin type IV; KEGG: bam:Bamb_1400 peptidase A24A, prepilin type IV. (189 aa)    
Predicted Functional Partners:
Daci_2075
PFAM: Flp/Fap pilin component; KEGG: eba:ebD22 INTERPRO: probable Flp/Fap pilin component.
  
  
 0.910
Daci_2073
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: reh:H16_B0184 flp pilus assembly protein CpaB.
  
  
 0.885
Daci_2076
PFAM: Flp/Fap pilin component; KEGG: reh:H16_A0722 flp pilus assembly protein, pilin Flp.
  
  
 0.792
Daci_2069
PFAM: type II secretion system protein; KEGG: reh:H16_B0188 flp pilus assembly protein TadB.
  
  
 0.779
Daci_2071
Flp pilus assembly protein ATPase CpaE-like protein; KEGG: bvi:Bcep1808_1488 response regulator receiver protein.
  
  
 0.778
Daci_2068
PFAM: type II secretion system protein; KEGG: bam:Bamb_1407 type II secretion system protein.
  
  
 0.719
Daci_2072
PFAM: type II and III secretion system protein; KEGG: bvi:Bcep1808_1487 type II and III secretion system protein; Belongs to the bacterial secretin family.
  
  
 0.716
Daci_2062
Sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bxe:Bxe_A2790 sigma54 specific transcriptional regulator, fis family.
  
  
 0.597
Daci_2064
PFAM: TadE family protein; KEGG: bpa:BPP2374 hypothetical protein.
  
  
 0.573
Daci_2065
PFAM: TadE family protein; KEGG: bmn:BMA10247_1050 TadE family protein.
  
  
 0.573
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.