Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_2083PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: azo:azo1059 conserved hypothetical secreted protein. (460 aa)    
Predicted Functional Partners:
Daci_2084
ErfK/YbiS/YcfS/YnhG; KEGG: aav:Aave_2318 ErfK/YbiS/YcfS/YnhG.
 
     0.951
def-2
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
 
 
   0.557
Daci_5544
KEGG: aav:Aave_1041 putative lipoprotein.
 
 
 
 0.475
Daci_0865
PFAM: Forkhead-associated protein; KEGG: aav:Aave_4680 FHA domain containing protein.
 
   
 0.438
Daci_2239
PFAM: Rieske [2Fe-2S] domain protein; KEGG: ajs:Ajs_1035 Rieske (2Fe-2S) domain protein.
  
     0.438
Daci_5997
TIGRFAM: glutamate--cysteine ligase; PFAM: glutamate--cysteine ligase GshA; KEGG: ajs:Ajs_3910 glutamate--cysteine ligase.
 
     0.434
Daci_2035
PFAM: Sporulation domain protein; KEGG: aav:Aave_3575 sporulation domain protein.
 
     0.433
Daci_5262
KEGG: aav:Aave_1195 putative transmembrane protein.
  
     0.417
Daci_0310
PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_0175 major facilitator superfamily MFS_1.
  
     0.407
Daci_1751
KEGG: yen:YE0990 AYP/GTP-binding protein.
   
   0.406
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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