STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2091PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: psp:PSPPH_3933 major facilitator family transporter. (481 aa)    
Predicted Functional Partners:
Daci_2090
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: psp:PSPPH_3932 glucose 1-dehydrogenase, putative.
 
     0.819
Daci_2089
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pfl:PFL_1365 oxidoreductase, short chain dehydrogenase/reductase family.
 
     0.801
Daci_2092
PFAM: polysaccharide deacetylase; KEGG: pfl:PFL_1362 polysaccharide deacetylase family protein.
 
     0.791
Daci_1354
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: ppu:PP_3740 major facilitator family transporter.
  
     0.744
Daci_2093
PFAM: Amidase; KEGG: pfl:PFL_1361 amidase family protein.
       0.686
Daci_4450
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: azo:azo2543 putative 4-hydroxybenzoate transporter protein.
  
     0.686
Daci_4438
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bja:bll5462 hypothetical metabolite transport protein.
 
   
 0.651
Daci_5948
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: vei:Veis_4283 major facilitator superfamily MFS_1.
 
   
 0.568
Daci_0238
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bja:blr0239 probable citrate-proton symporter.
  
     0.410
Daci_2094
Hypothetical protein.
       0.401
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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