STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2092PFAM: polysaccharide deacetylase; KEGG: pfl:PFL_1362 polysaccharide deacetylase family protein. (291 aa)    
Predicted Functional Partners:
Daci_2091
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: psp:PSPPH_3933 major facilitator family transporter.
 
    0.812
Daci_2093
PFAM: Amidase; KEGG: pfl:PFL_1361 amidase family protein.
       0.792
Daci_2090
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: psp:PSPPH_3932 glucose 1-dehydrogenase, putative.
 
    0.730
Daci_2089
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pfl:PFL_1365 oxidoreductase, short chain dehydrogenase/reductase family.
  
    0.682
Daci_2943
KEGG: mms:mma_2623 bacteriophage N4 adsorption protein B.
  
  
 0.539
Daci_5874
PFAM: glycosyl transferase family 2; KEGG: bxe:Bxe_A2029 putative glycosyl transferase, family 2.
  
  
 0.539
Daci_1318
PFAM: glycosyl transferase family 2; methyltransferase small; Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: aav:Aave_4142 glycosyl transferase, family 2.
  
  
 0.499
Daci_2094
Hypothetical protein.
       0.444
Daci_2087
KEGG: pfl:PFL_1368 conserved hypothetical protein.
 
    0.440
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.