STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2095KEGG: har:HEAR2597 putative membrane protein; putative 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family. (510 aa)    
Predicted Functional Partners:
Daci_3176
KEGG: ajs:Ajs_2343 hypothetical protein.
  
     0.540
Daci_2753
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bbt:BBta_1545 putative heavy metal efflux pump, HlyD family; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
    0.523
Daci_4779
PFAM: SPW repeat; KEGG: pol:Bpro_2330 hypothetical protein.
 
  
 0.514
Daci_0562
PFAM: GtrA family protein; KEGG: aav:Aave_0598 GtrA family protein.
 
   
 0.508
Daci_0563
PFAM: YdjC family protein; KEGG: aav:Aave_0597 hypothetical protein.
 
  
 0.495
Daci_0471
KEGG: pol:Bpro_3490 hypothetical protein.
  
     0.482
Daci_0561
PFAM: glycosyl transferase family 2; KEGG: aav:Aave_0599 glycosyl transferase, family 2.
 
  
 0.451
Daci_2904
KEGG: aav:Aave_1802 hypothetical protein.
  
     0.448
Daci_1190
PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_2346 major facilitator superfamily MFS_1.
 
   
 0.447
Daci_2190
PFAM: glycosyl transferase family 39; KEGG: bbr:BB4268 hypothetical protein.
  
     0.442
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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