STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2096PFAM: Resolvase domain; KEGG: bpd:BURPS668_2984 putative site-specific recombinases, DNA invertase Pin. (190 aa)    
Predicted Functional Partners:
Daci_2679
PFAM: transposase Tn3 family protein; KEGG: ppd:Ppro_3845 transposase Tn3 family protein.
 
   
 0.758
Daci_2581
PFAM: replication gene A; KEGG: bps:BPSS1052 hypothetical bacteriophage replication protein.
   
  
 0.607
Daci_2615
PFAM: replication gene A; KEGG: bps:BPSS1052 hypothetical bacteriophage replication protein.
   
  
 0.607
Daci_2604
PFAM: P2 phage tail completion R family protein; KEGG: rso:RSc1929 probable tail completion-like protein.
   
    0.571
Daci_2638
PFAM: P2 phage tail completion R family protein; KEGG: rso:RSc1929 probable tail completion-like protein.
   
    0.571
Daci_2587
PFAM: P2 GpU family protein; KEGG: pna:Pnap_3314 phage P2 GpU family protein.
   
  
 0.545
Daci_2621
PFAM: P2 GpU family protein; KEGG: pna:Pnap_3314 phage P2 GpU family protein.
   
  
 0.545
Daci_2590
PFAM: tail E family protein; KEGG: rso:RSc1916 probable phage-related protein.
   
    0.495
Daci_2624
PFAM: tail E family protein; KEGG: rso:RSc1916 probable phage-related protein.
   
    0.495
Daci_2608
PFAM: tail X family protein; KEGG: spt:SPA2577 putative phage tail protein.
   
    0.480
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.