Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_2099KEGG: ajs:Ajs_0721 hypothetical protein. (255 aa)    
Predicted Functional Partners:
Daci_2097
PFAM: Zonular occludens toxin; KEGG: ajs:Ajs_0719 Zonular occludens toxin.
       0.773
Daci_2098
KEGG: ajs:Ajs_0720 hypothetical protein.
       0.773
Daci_2100
KEGG: ajs:Ajs_0721 hypothetical protein.
       0.645
Daci_5567
PFAM: Alkaline phosphatase; KEGG: rso:RSc0098 putative alkaline phosphatase signal peptide protein; Belongs to the alkaline phosphatase family.
  
  
 0.461
Daci_5568
PFAM: Alkaline phosphatase; KEGG: rso:RSc0097 putative alkaline phosphatase lipoprotein transmembrane; Belongs to the alkaline phosphatase family.
  
  
 0.461
Daci_2096
PFAM: Resolvase domain; KEGG: bpd:BURPS668_2984 putative site-specific recombinases, DNA invertase Pin.
       0.425
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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