STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2103PFAM: replication initiation factor; KEGG: ajs:Ajs_0724 replication initiation factor. (368 aa)    
Predicted Functional Partners:
Daci_2097
PFAM: Zonular occludens toxin; KEGG: ajs:Ajs_0719 Zonular occludens toxin.
 
  
 0.824
Daci_2102
KEGG: ajs:Ajs_0723 conserved hypothetical protein, putative phage associated protein.
  
    0.752
Daci_0690
KEGG: aav:Aave_0425 hypothetical protein.
  
     0.652
Daci_0435
SMART: AAA ATPase; KEGG: pap:PSPA7_3703 ATPase.
  
  
 0.440
Daci_2696
SMART: AAA ATPase; KEGG: rme:Rmet_1344 ATPase.
  
  
 0.440
Daci_4179
KEGG: ajs:Ajs_1256 hypothetical protein.
  
  
 0.440
Daci_2585
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: pna:Pnap_3316 putative transcriptional regulator, XRE family.
  
   
 0.426
Daci_2619
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: pna:Pnap_3316 putative transcriptional regulator, XRE family.
  
   
 0.426
Daci_2588
TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: pna:Pnap_3313 phage tail tape measure protein, TP901 family.
  
     0.410
Daci_2622
TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: pna:Pnap_3313 phage tail tape measure protein, TP901 family.
  
     0.410
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.