STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2109KEGG: ajs:Ajs_1115 amidase, hydantoinase/carbamoylase family; TIGRFAM: amidase, hydantoinase/carbamoylase family; OHCU decarboxylase; PFAM: peptidase M20; peptidase dimerisation domain protein. (591 aa)    
Predicted Functional Partners:
Daci_2864
TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: aav:Aave_0969 dihydropyrimidinase.
 
 
 0.960
Daci_2110
Urate catabolism protein; KEGG: ajs:Ajs_1117 polysaccharide deacetylase; TIGRFAM: urate catabolism protein; PFAM: polysaccharide deacetylase.
    0.923
Daci_2108
PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: ajs:Ajs_1114 peptidase dimerisation domain protein.
 
   
 0.918
Daci_2862
TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: aav:Aave_0967 dihydroorotate dehydrogenase family protein.
 
 0.900
Daci_2861
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: aav:Aave_0966 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
 
 0.836
Daci_2111
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ajs:Ajs_1118 transcriptional regulator, GntR family.
 
   
 0.816
Daci_0333
PFAM: Aldehyde Dehydrogenase; KEGG: pla:Plav_1859 aldehyde dehydrogenase.
    
 0.806
Daci_4882
PFAM: Aldehyde Dehydrogenase; KEGG: ajs:Ajs_1756 aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.
    
 0.806
Daci_2121
TIGRFAM: hydroxyisourate hydrolase; PFAM: Transthyretin; KEGG: ajs:Ajs_1123 transthyretin; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
  
 0.802
Daci_0186
PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0126 AMP-dependent synthetase and ligase.
   
 
  0.801
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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