STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2134Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_1482 transcriptional regulator, LysR family. (310 aa)    
Predicted Functional Partners:
Daci_2137
PFAM: inner-membrane translocator; KEGG: aav:Aave_1134 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
     0.576
Daci_2135
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_3101 ABC transporter related.
       0.514
Daci_2136
PFAM: inner-membrane translocator; KEGG: aav:Aave_1133 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.514
Daci_2138
PFAM: basic membrane lipoprotein; KEGG: aav:Aave_1135 basic membrane lipoprotein.
 
     0.483
Daci_2133
KEGG: nca:Noca_4310 hypothetical protein.
       0.422
Daci_1988
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rme:Rmet_5666 transcriptional regulator, LysR family.
  
     0.405
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.