STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2136PFAM: inner-membrane translocator; KEGG: aav:Aave_1133 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (368 aa)    
Predicted Functional Partners:
Daci_2135
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_3101 ABC transporter related.
 
 
 0.999
Daci_2137
PFAM: inner-membrane translocator; KEGG: aav:Aave_1134 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
0.998
Daci_2138
PFAM: basic membrane lipoprotein; KEGG: aav:Aave_1135 basic membrane lipoprotein.
 
 
 0.991
Daci_2142
PFAM: basic membrane lipoprotein; KEGG: aav:Aave_1135 basic membrane lipoprotein.
 
 
 0.974
Daci_2146
PFAM: basic membrane lipoprotein; KEGG: aav:Aave_1142 basic membrane lipoprotein.
 
 
 0.971
Daci_2134
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_1482 transcriptional regulator, LysR family.
       0.514
rbsA
ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
     0.498
Daci_0785
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rle:pRL80086 putative ATP-binding component of ABC transporter.
 
     0.479
Daci_4583
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_2046 ABC transporter related.
 
     0.461
Daci_3182
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_3418 ABC transporter related.
 
     0.422
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.