Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Daci_2175PFAM: FeoA family protein; KEGG: aav:Aave_1160 FeoA family protein. (113 aa)    
Predicted Functional Partners:
Daci_2176
TIGRFAM: ferrous iron transport protein B; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: aav:Aave_1161 ferrous iron transport protein B.
 
  
 0.996
Daci_2177
KEGG: ajs:Ajs_3005 hypothetical protein.
       0.750
Daci_2174
PFAM: protein of unknown function UPF0153; KEGG: aav:Aave_1159 protein of unknown function UPF0153.
       0.558
Daci_0482
Iron permease FTR1; PFAM: cytochrome c class I; iron permease FTR1; KEGG: ajs:Ajs_1240 iron permease FTR1.
     
 0.511
Daci_2366
Histidine kinase; KEGG: pap:PSPA7_4410 virulence sensor protein BvgS; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: extracellular solute-binding protein family 3.
     
 0.418
Daci_3080
Histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pfl:PFL_3637 sensor histidine kinase/response regulator.
     
 0.414
Daci_2381
KEGG: vei:Veis_1656 heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family.
 
     0.410
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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