STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2183KEGG: vei:Veis_1775 hypothetical protein. (281 aa)    
Predicted Functional Partners:
murJ
Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.
       0.670
Daci_1123
KEGG: vei:Veis_0989 hypothetical protein.
  
     0.562
Daci_6032
KEGG: ajs:Ajs_4108 hypothetical protein.
  
     0.555
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
       0.518
Daci_2296
PFAM: fatty acid hydroxylase; KEGG: bvi:Bcep1808_2232 sterol desaturase-like protein.
  
     0.448
Daci_1253
KEGG: ajs:Ajs_0499 hypothetical protein.
  
     0.423
Daci_5347
KEGG: aav:Aave_1882 hypothetical protein.
 
     0.402
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.