STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2195KEGG: ptr:750122 hypothetical protein LOC750122. (220 aa)    
Predicted Functional Partners:
Daci_3759
PFAM: response regulator receiver; CheW domain protein; KEGG: vei:Veis_1763 putative CheW protein.
  
 
 0.691
Daci_2194
KEGG: aav:Aave_1979 hypothetical protein.
       0.617
Daci_1576
CheA signal transduction histidine kinase; PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: vei:Veis_3017 CheA signal transduction histidine kinases.
  
 
 0.604
Daci_0655
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: aav:Aave_4378 CheA signal transduction histidine kinase.
  
 
 0.513
Daci_3831
GAF sensor hybrid histidine kinase; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE3 domain protein; KEGG: aav:Aave_3996 multi-sensor hybrid histidine kinase.
  
 
 0.475
Daci_6017
KEGG: maq:Maqu_3675 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; MHYT domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
 
 0.466
Daci_0656
PFAM: CheW domain protein; KEGG: vei:Veis_2175 putative CheW protein.
  
 
 0.447
Daci_0741
PFAM: CheW domain protein; KEGG: rfr:Rfer_0924 CheW protein.
  
 
 0.447
Daci_1574
PFAM: CheW domain protein; KEGG: ajs:Ajs_3576 putative CheW protein.
  
 
 0.447
Daci_3594
PFAM: CheW domain protein; KEGG: mpt:Mpe_A2970 hypothetical protein.
  
 
 0.447
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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