STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2199PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility domain; KEGG: pol:Bpro_4581 NAD-dependent epimerase/dehydratase. (217 aa)    
Predicted Functional Partners:
Daci_4162
KEGG: xau:Xaut_3047 ATP-dependent endonuclease family protein.
   
    0.681
Daci_1735
SMART: AAA ATPase; KEGG: xac:XAC2215 hypothetical protein.
   
    0.591
Daci_2200
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: aav:Aave_0668 glyoxalase/bleomycin resistance protein/dioxygenase.
  
    0.591
Daci_2198
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_4580 transcriptional regulator, LysR family.
       0.567
Daci_0945
PFAM: aldo/keto reductase; KEGG: esa:ESA_03132 hypothetical protein.
 
  
 0.542
Daci_4027
PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: bbr:BB4023 hypothetical protein.
   
    0.503
Daci_3100
PFAM: helix-turn-helix HxlR type; KEGG: bch:Bcen2424_3397 transcriptional regulator, HxlR family.
  
  
 0.488
Daci_3736
PFAM: helix-turn-helix HxlR type; KEGG: bbr:BB2332 putative transcriptional regulator.
 
  
 0.480
Daci_2481
Hypothetical protein.
  
    0.479
Daci_2201
PFAM: major facilitator superfamily MFS_1; KEGG: pae:PA4113 probable MFS transporter.
 
     0.471
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.