Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Daci_2223PFAM: Negative transcriptional regulator; KEGG: aav:Aave_4171 FMN-binding negative transcriptional regulator. (227 aa)    
Predicted Functional Partners:
Daci_3065
KEGG: ret:RHE_CH02944 hypothetical protein.
  
    0.740
Daci_2222
KEGG: bur:Bcep18194_B2580 hypothetical protein.
       0.700
Daci_2221
KEGG: pap:PSPA7_1712 hypothetical protein.
       0.619
Daci_2224
PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: reh:H16_B1977 transcriptional regulator, MocR family.
       0.579
Daci_1660
KEGG: ajs:Ajs_3558 GCN5-related N-acetyltransferase.
 
     0.513
Daci_4814
PFAM: GCN5-related N-acetyltransferase; KEGG: azo:azo3709 hypothetical protein.
 
    0.429
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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