STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2234PFAM: EAL domain protein; phosphotransferase system EIIC; KEGG: pfl:PFL_3312 phosphotransferase system EIIC domain/EAL domain protein. (702 aa)    
Predicted Functional Partners:
Daci_1599
Diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: aha:AHA_2752 GGDEF domain protein.
 
  
 0.850
Daci_1999
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bja:blr0364 hypothetical protein.
 
  
 0.823
Daci_1200
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aav:Aave_4247 diguanylate cyclase.
 
  
 0.818
Daci_3483
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: pau:PA14_49890 hypothetical protein.
 
  
 0.818
Daci_4831
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: reh:H16_A0406 hypothetical protein with GGDEF domain.
 
  
 0.817
Daci_2131
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aav:Aave_1127 diguanylate cyclase with PAS/PAC sensor.
 
  
 0.816
Daci_3037
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aav:Aave_2926 diguanylate cyclase.
 
  
 0.816
Daci_3474
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: reh:H16_A0406 hypothetical protein with GGDEF domain.
 
  
 0.816
Daci_5901
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pen:PSEEN1308 hypothetical protein.
 
  
 0.816
Daci_3478
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: spe:Spro_1181 diguanylate cyclase.
 
  
 0.815
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.