STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2247Transcriptional regulator, Fis family; PFAM: helix-turn-helix Fis-type; GAF domain protein; KEGG: pol:Bpro_1769 putative transcriptional regulator, fis family. (388 aa)    
Predicted Functional Partners:
Daci_4585
KEGG: pol:Bpro_1459 dihydroxyacetone kinase, subunit L; TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak kinase; Dak phosphatase.
   
 
 0.572
Daci_2246
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: vei:Veis_2882 tripartite ATP-independent periplasmic transporter, DctQ component.
       0.458
Daci_2530
Putative sigma54 specific transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bch:Bcen2424_5529 sigma54 specific transcriptional regulator, fis family.
 
   
 0.453
Daci_2248
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: vei:Veis_4544 (2Fe-2S)-binding domain protein.
       0.452
Daci_2245
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rfr:Rfer_2872 TRAP dicarboxylate transporter-DctM subunit.
       0.437
Daci_2249
PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: vei:Veis_4543 carbon-monoxide dehydrogenase (acceptor).
  
    0.406
Daci_5650
PFAM: Aldehyde Dehydrogenase; KEGG: mpt:Mpe_A0599 aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family.
 
 
 
 0.403
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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