Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Daci_2252PFAM: VWA containing CoxE family protein; KEGG: vei:Veis_4536 VWA containing CoxE family protein. (424 aa)    
Predicted Functional Partners:
Daci_2249
PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: vei:Veis_4543 carbon-monoxide dehydrogenase (acceptor).
 
   
 0.954
Daci_2250
Carbon-monoxide dehydrogenase (acceptor); PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: vei:Veis_4542 transcriptional regulator, fis family.
 
     0.951
Daci_2251
PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: vei:Veis_4537 ATPase associated with various cellular activities, AAA_5.
 
     0.948
Daci_2253
PFAM: carbon monoxide dehydrogenase subunit G; KEGG: vei:Veis_4535 carbon monoxide dehydrogenase subunit G.
 
     0.931
Daci_2248
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: vei:Veis_4544 (2Fe-2S)-binding domain protein.
 
   
 0.810
Daci_2254
PFAM: protein of unknown function DUF182; KEGG: pol:Bpro_0572 protein of unknown function DUF182.
 
     0.544
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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