STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2256TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: reu:Reut_A0572 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (538 aa)    
Predicted Functional Partners:
Daci_2257
PFAM: acriflavin resistance protein; KEGG: mms:mma_1683 cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.938
Daci_2420
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bxe:Bxe_B2008 RND efflux pump, membrane fusion protein, CzcB subfamily; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 
0.915
Daci_2258
PFAM: acriflavin resistance protein; KEGG: mms:mma_1682 AcrB/AcrD/AcrF family membrane protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.889
Daci_2259
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: mms:mma_1681 outer membrane protein, TolC-like.
 
 
 0.853
Daci_2418
PFAM: acriflavin resistance protein; KEGG: bxe:Bxe_B2010 cation/multidrug efflux pump, AcrB/AcrD/AcrF family, RND superfamily; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.841
Daci_2419
PFAM: acriflavin resistance protein; KEGG: bxe:Bxe_B2009 cation/multidrug efflux pump, AcrB/AcrD/AcrF family, RND superfamily; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.839
macB
ABC transporter related; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.799
macB-2
ABC transporter related; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.799
Daci_0164
TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: bch:Bcen2424_4745 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family.
 
 
 0.756
Daci_5136
TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pna:Pnap_1299 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family.
 
 
 0.752
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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