STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2267PFAM: PepSY-associated TM helix domain protein; KEGG: mms:mma_3524 hypothetical protein. (409 aa)    
Predicted Functional Partners:
Daci_2266
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mms:mma_1643 TonB-dependent ferric siderophore receptor.
 
  
 0.803
Daci_2265
Membrane protein-like protein; KEGG: mlo:mlr2123 hypothetical protein.
       0.483
Daci_5853
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: neu:NE1191 putative transmembrane sensor.
 
     0.441
Daci_3948
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ajs:Ajs_2033 TonB-dependent receptor.
 
   
 0.439
Daci_0445
PFAM: copper resistance protein CopC; KEGG: rme:Rmet_6114 copper resistance protein CopC.
  
    0.425
Daci_2263
Signal transduction histidine kinase, LytS; PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; KEGG: aav:Aave_2036 integral membrane sensor signal transduction histidine kinase.
       0.424
Daci_2264
KEGG: ajs:Ajs_1151 hypothetical protein.
       0.424
Daci_3326
TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: FecR protein; sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ppf:Pput_0896 anti-FecI sigma factor, FecR.
 
   
 0.414
Daci_3269
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: neu:NE1098 putative transmembrane sensor.
 
     0.405
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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