STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2272KEGG: aav:Aave_2045 alpha/beta hydrolase fold. (286 aa)    
Predicted Functional Partners:
Daci_2273
Proteasome-type protease-like protein; KEGG: aav:Aave_2046 20S proteasome, A and B subunits.
       0.833
mutS
DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.
   
   0.746
Daci_0829
PFAM: branched-chain amino acid transport; KEGG: ajs:Ajs_4055 branched-chain amino acid transport.
  
     0.602
Daci_4728
KEGG: pol:Bpro_1783 hypothetical protein.
 
    0.599
Daci_1123
KEGG: vei:Veis_0989 hypothetical protein.
  
     0.559
Daci_5531
KEGG: vei:Veis_2402 sulfate transporter/antisigma-factor antagonist STAS.
  
     0.553
Daci_1337
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: aav:Aave_4089 acyl-CoA dehydrogenase domain protein.
  
  0.459
Daci_4952
KEGG: aav:Aave_2989 hypothetical protein.
  
 
 
 0.455
Daci_2229
PFAM: HemY domain protein; KEGG: aav:Aave_1996 HemY domain protein.
  
     0.450
Daci_1124
KEGG: ajs:Ajs_0447 hypothetical protein.
  
  
 0.428
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.