STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2283PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: pla:Plav_2454 SMP-30/gluconolaconase/LRE domain protein. (317 aa)    
Predicted Functional Partners:
Daci_0342
TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; PFAM: Pyrrolo-quinoline quinone; KEGG: aav:Aave_0411 pyrrolo-quinoline quinone.
  
  
 0.931
Daci_0257
Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: ajs:Ajs_1999 gluconolactonase.
  
  
 
0.925
Daci_4272
PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: reu:Reut_B4613 gluconolactonase.
  
  
 
0.924
Daci_4738
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: vei:Veis_2069 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
  
 
 0.912
Daci_3761
TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; KEGG: ajs:Ajs_2053 carbohydrate kinase, thermoresistant glucokinase family.
    
 0.910
Daci_2282
PFAM: conserved hypothetical protein; KEGG: pna:Pnap_0869 uncharacterized protein UPF0065.
       0.732
Daci_0349
PFAM: beta-lactamase; KEGG: rpb:RPB_2265 beta-lactamase.
  
     0.616
Daci_2284
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bbr:BB0337 hypothetical protein; Belongs to the TPP enzyme family.
  
  
 0.566
Daci_2285
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB0336 3-ketoacyl-(acyl-carrier-protein) reductase.
  
  
 0.557
Daci_2281
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: reh:H16_A0034 transcriptional regulator, GntR-family.
       0.499
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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